Bio::Structure::Chain(3)                   User Contributed Perl Documentation




NAME
       Bio::Structure::Chain - Bioperl structure Object, describes a chain

SYNOPSIS
         #add synopsis here

DESCRIPTION
       This object stores a Bio::Structure::Chain

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to one
       of the Bioperl mailing lists.  Your participation is much appreciated.

         bioperl-lATbioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-lATbioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track
       the bugs and their resolution.  Bug reports can be submitted via the
       web:

         http://bugzilla.open-bio.org/

AUTHOR - Kris Boulez
       Email kris.boulezATalgonomics.com

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   new()
        Title   : new()
        Usage   : $struc = Bio::Structure::Chain->new(
                                  -id  => 'human_id',
                                  -accession_number => 'AL000012',
                                                  );

        Function: Returns a new Bio::Structure::Chain object from basic
                       constructors. Usually called from Bio::Structure::IO.
        Returns : a new Bio::Structure::Chain object

   residue()
        Title   : residue
        Usage   :
        Function:  nothing useful until I get symbolic references to do what I want
        Returns :
        Args    :

   add_residue()
        Title   : add_residue
        Usage   :
        Function: nothing useful until I get symbolic references to do what I want
        Returns :
        Args    :

   model()
        Title   : model
        Usage   :
        Function: nothing useful until I get symbolic references to do what I want
        Returns :
        Args    :

   id()
        Title   : id
        Usage   : $chain->id("chain B")
        Function: Gets/sets the ID for this chain
        Returns : the ID
        Args    : the ID

   _remove_residues()
        Title   : _remove_residues
        Usage   :
        Function:
        Returns :
        Args    :

   _remove_model()
        Title   : _remove_model
        Usage   :
        Function: Removes the Model this Chain is atttached to.
        Returns :
        Args    :

   _grandparent()
        Title   : _grandparent
        Usage   :
        Function: get/set a symbolic reference to our grandparent
        Returns :
        Args    :



perl v5.12.2                                                 February 24, 2011